- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Inputs
ID | Type | Title | Doc |
---|---|---|---|
inputModule1 | File |
Js implementation unit |
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inputModule2 | File |
Python implementation unit |
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inputModule3 | File |
Python implementation unit |
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inputModule4 | File |
Python implementation unit |
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inputModule5 | File |
Python implementation unit |
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inputModule6 | File |
Python implementation unit |
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inputModule7 | File |
Python implementation unit |
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inputModule8 | File |
Python implementation unit |
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inputModule9 | File |
Python implementation unit |
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inputModule10 | File |
Python implementation unit |
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inputModule11 | File |
Python implementation unit |
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inputModule12 | File |
Python implementation unit |
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inputModule13 | File |
Python implementation unit |
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inputModule14 | File |
Python implementation unit |
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inputModule15 | File |
Python implementation unit |
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inputModule16 | File |
Python implementation unit |
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inputModule17 | File |
Python implementation unit |
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inputModule18 | File |
Python implementation unit |
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inputModule19 | File |
Python implementation unit |
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inputModule20 | File |
Python implementation unit |
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inputModule21 | File |
Python implementation unit |
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inputModule22 | File |
Python implementation unit |
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inputModule23 | File |
Python implementation unit |
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inputModule24 | File |
Python implementation unit |
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inputModule25 | File |
Python implementation unit |
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inputModule26 | File |
Python implementation unit |
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inputModule27 | File |
Python implementation unit |
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inputModule28 | File |
Python implementation unit |
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inputModule29 | File |
Python implementation unit |
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inputModule30 | File |
Python implementation unit |
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inputModule31 | File |
Python implementation unit |
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inputModule32 | File |
Python implementation unit |
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inputModule33 | File |
Python implementation unit |
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inputModule34 | File |
Python implementation unit |
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inputModule35 | File |
Python implementation unit |
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inputModule36 | File |
Python implementation unit |
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inputModule37 | File |
Python implementation unit |
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inputModule38 | File |
Python implementation unit |
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inputModule39 | File |
Python implementation unit |
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inputModule40 | File |
Python implementation unit |
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inputModule41 | File |
Python implementation unit |
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inputModule42 | File |
Python implementation unit |
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inputModule43 | File |
Python implementation unit |
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inputModule44 | File |
Python implementation unit |
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inputModule45 | File |
Python implementation unit |
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inputModule46 | File |
Python implementation unit |
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inputModule47 | File |
Python implementation unit |
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inputModule48 | File |
Python implementation unit |
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inputModule49 | File |
Python implementation unit |
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inputModule50 | File |
Python implementation unit |
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inputModule51 | File |
Python implementation unit |
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inputModule52 | File |
Python implementation unit |
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inputModule53 | File |
Python implementation unit |
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inputModule54 | File |
Python implementation unit |
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inputModule55 | File |
Python implementation unit |
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inputModule56 | File |
Python implementation unit |
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inputModule57 | File |
Python implementation unit |
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inputModule58 | File |
Python implementation unit |
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inputModule59 | File |
Python implementation unit |
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inputModule60 | File |
Python implementation unit |
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inputModule61 | File |
Python implementation unit |
Steps
ID | Runs | Label | Doc |
---|---|---|---|
output-cases |
output-cases.cwl
(CommandLineTool)
|
Output cases |
|
pneumonia---primary |
pneumonia---primary.cwl
(CommandLineTool)
|
Identify Pneumonia - primary |
|
pneumonia---secondary |
pneumonia---secondary.cwl
(CommandLineTool)
|
Identify Pneumonia - secondary |
|
pneumonia-basal---primary |
pneumonia-basal---primary.cwl
(CommandLineTool)
|
Identify Pneumonia basal - primary |
|
pneumonia-cough---primary |
pneumonia-cough---primary.cwl
(CommandLineTool)
|
Identify Pneumonia cough - primary |
|
pneumonia-ecoli---primary |
pneumonia-ecoli---primary.cwl
(CommandLineTool)
|
Identify Pneumonia ecoli - primary |
|
pneumonia-group---primary |
pneumonia-group---primary.cwl
(CommandLineTool)
|
Identify Pneumonia group - primary |
|
pneumonia-lobar---primary |
pneumonia-lobar---primary.cwl
(CommandLineTool)
|
Identify Pneumonia lobar - primary |
|
read-potential-cases-fhir |
read-potential-cases-fhir.cwl
(CommandLineTool)
|
Read potential cases from a FHIR server. |
|
viral-pneumonia---primary |
viral-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Viral Pneumonia - primary |
|
bronchopneumonia---primary |
bronchopneumonia---primary.cwl
(CommandLineTool)
|
Identify Bronchopneumonia - primary |
|
pneumonia-proteu---primary |
pneumonia-proteu---primary.cwl
(CommandLineTool)
|
Identify Pneumonia proteu - primary |
|
pneumonia-abscess---primary |
pneumonia-abscess---primary.cwl
(CommandLineTool)
|
Identify Pneumonia abscess - primary |
|
pneumonia-carinii---primary |
pneumonia-carinii---primary.cwl
(CommandLineTool)
|
Identify Pneumonia carinii - primary |
|
pneumonia-chapter---primary |
pneumonia-chapter---primary.cwl
(CommandLineTool)
|
Identify Pneumonia chapter - primary |
|
pneumonia-measles---primary |
pneumonia-measles---primary.cwl
(CommandLineTool)
|
Identify Pneumonia measles - primary |
|
pneumonia-simplex---primary |
pneumonia-simplex---primary.cwl
(CommandLineTool)
|
Identify Pneumonia simplex - primary |
|
viral-pneumonia---secondary |
viral-pneumonia---secondary.cwl
(CommandLineTool)
|
Identify Viral Pneumonia - secondary |
|
atypical-pneumonia---primary |
atypical-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Atypical Pneumonia - primary |
|
hospital-pneumonia---primary |
hospital-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Hospital Pneumonia - primary |
|
pneumonia-bacteria---primary |
pneumonia-bacteria---primary.cwl
(CommandLineTool)
|
Identify Pneumonia bacteria - primary |
|
pneumonia-detected---primary |
pneumonia-detected---primary.cwl
(CommandLineTool)
|
Identify Pneumonia detected - primary |
|
pneumonia-organism---primary |
pneumonia-organism---primary.cwl
(CommandLineTool)
|
Identify Pneumonia organism - primary |
|
bilateral-pneumonia---primary |
bilateral-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Bilateral Pneumonia - primary |
|
pneumonia-community---primary |
pneumonia-community---primary.cwl
(CommandLineTool)
|
Identify Pneumonia community - primary |
|
pneumonia-pertussis---primary |
pneumonia-pertussis---primary.cwl
(CommandLineTool)
|
Identify Pneumonia pertussis - primary |
|
pneumonia-pplocause---primary |
pneumonia-pplocause---primary.cwl
(CommandLineTool)
|
Identify Pneumonia pplocause - primary |
|
pneumonia-varicella---primary |
pneumonia-varicella---primary.cwl
(CommandLineTool)
|
Identify Pneumonia varicella - primary |
|
rheumatic-pneumonia---primary |
rheumatic-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Rheumatic Pneumonia - primary |
|
syncytial-pneumonia---primary |
syncytial-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Syncytial Pneumonia - primary |
|
chlamydial-pneumonia---primary |
chlamydial-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Chlamydial Pneumonia - primary |
|
infectious-pneumonia---primary |
infectious-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Infectious Pneumonia - primary |
|
pneumonia-adenovirus---primary |
pneumonia-adenovirus---primary.cwl
(CommandLineTool)
|
Identify Pneumonia adenovirus - primary |
|
pneumonia-identified---primary |
pneumonia-identified---primary.cwl
(CommandLineTool)
|
Identify Pneumonia identified - primary |
|
pneumonia-influenzae---primary |
pneumonia-influenzae---primary.cwl
(CommandLineTool)
|
Identify Pneumonia influenzae - primary |
|
pneumonia-klebsiella---primary |
pneumonia-klebsiella---primary.cwl
(CommandLineTool)
|
Identify Pneumonia klebsiella - primary |
|
pneumonia-legionella---primary |
pneumonia-legionella---primary.cwl
(CommandLineTool)
|
Identify Pneumonia legionella - primary |
|
pneumonia-mycoplasma---primary |
pneumonia-mycoplasma---primary.cwl
(CommandLineTool)
|
Identify Pneumonia mycoplasma - primary |
|
pneumonia-postmeasle---primary |
pneumonia-postmeasle---primary.cwl
(CommandLineTool)
|
Identify Pneumonia postmeasle - primary |
|
pneumonia-pseudomona---primary |
pneumonia-pseudomona---primary.cwl
(CommandLineTool)
|
Identify Pneumonia pseudomona - primary |
|
pneumonia-salmonella---primary |
pneumonia-salmonella---primary.cwl
(CommandLineTool)
|
Identify Pneumonia salmonella - primary |
|
bacterial-pneumonia---secondary |
bacterial-pneumonia---secondary.cwl
(CommandLineTool)
|
Identify Bacterial Pneumonia - secondary |
|
pneumonia-pneumonitis---primary |
pneumonia-pneumonitis---primary.cwl
(CommandLineTool)
|
Identify Pneumonia pneumonitis - primary |
|
pneumonia-unspecified---primary |
pneumonia-unspecified---primary.cwl
(CommandLineTool)
|
Identify Pneumonia unspecified - primary |
|
pneumonia-varicella---secondary |
pneumonia-varicella---secondary.cwl
(CommandLineTool)
|
Identify Pneumonia varicella - secondary |
|
tuberculous-pneumonia---primary |
tuberculous-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Tuberculous Pneumonia - primary |
|
gramnegative-pneumonia---primary |
gramnegative-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Gramnegative Pneumonia - primary |
|
infectious-pneumonia---secondary |
infectious-pneumonia---secondary.cwl
(CommandLineTool)
|
Identify Infectious Pneumonia - secondary |
|
interstitial-pneumonia---primary |
interstitial-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Interstitial Pneumonia - primary |
|
pneumococcal-pneumonia---primary |
pneumococcal-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Pneumococcal Pneumonia - primary |
|
pneumonia-classified---secondary |
pneumonia-classified---secondary.cwl
(CommandLineTool)
|
Identify Pneumonia classified - secondary |
|
pneumonia-influenzae---secondary |
pneumonia-influenzae---secondary.cwl
(CommandLineTool)
|
Identify Pneumonia influenzae - secondary |
|
pneumonia-streptococcu---primary |
pneumonia-streptococcu---primary.cwl
(CommandLineTool)
|
Identify Pneumonia streptococcu - primary |
|
pneumonia-actinomycosis---primary |
pneumonia-actinomycosis---primary.cwl
(CommandLineTool)
|
Identify Pneumonia actinomycosis - primary |
|
pneumonia-aspergillosis---primary |
pneumonia-aspergillosis---primary.cwl
(CommandLineTool)
|
Identify Pneumonia aspergillosis - primary |
|
pneumonia-consolidation---primary |
pneumonia-consolidation---primary.cwl
(CommandLineTool)
|
Identify Pneumonia consolidation - primary |
|
pneumonia-parainfluenza---primary |
pneumonia-parainfluenza---primary.cwl
(CommandLineTool)
|
Identify Pneumonia parainfluenza - primary |
|
pneumonia-staphylococcu---primary |
pneumonia-staphylococcu---primary.cwl
(CommandLineTool)
|
Identify Pneumonia staphylococcu - primary |
|
pneumonia-unspecified---secondary |
pneumonia-unspecified---secondary.cwl
(CommandLineTool)
|
Identify Pneumonia unspecified - secondary |
|
postoperative-pneumonia---primary |
postoperative-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Postoperative Pneumonia - primary |
|
pneumonia-streptococcu---secondary |
pneumonia-streptococcu---secondary.cwl
(CommandLineTool)
|
Identify Pneumonia streptococcu - secondary |
Outputs
ID | Type | Label | Doc |
---|---|---|---|
cases | File |
https://w3id.org/cwl/view/git/3072b64a7b9991916a65bf6b16c4c770065990e6/Pneumonia.cwl