Disease:
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Fetched 2026-10-08 03:51:08 GMT
Verified with cwltool version 3.1.20241112140730
- Selected
- |
- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| inputModule1 | File |
Js implementation unit |
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| inputModule2 | File |
Python implementation unit |
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| inputModule3 | File |
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| inputModule4 | File |
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| inputModule5 | File |
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| inputModule6 | File |
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| inputModule7 | File |
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| inputModule8 | File |
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| inputModule9 | File |
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| inputModule10 | File |
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| inputModule11 | File |
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| inputModule12 | File |
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| inputModule13 | File |
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| inputModule14 | File |
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| inputModule15 | File |
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| inputModule16 | File |
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| inputModule17 | File |
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| inputModule18 | File |
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| inputModule19 | File |
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| inputModule20 | File |
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| inputModule21 | File |
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| inputModule22 | File |
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| inputModule23 | File |
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| inputModule24 | File |
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| inputModule25 | File |
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| inputModule26 | File |
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| inputModule27 | File |
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| inputModule28 | File |
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| inputModule29 | File |
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| inputModule30 | File |
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| inputModule31 | File |
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| inputModule32 | File |
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| inputModule33 | File |
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| inputModule34 | File |
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| inputModule35 | File |
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| inputModule36 | File |
Python implementation unit |
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| inputModule37 | File |
Python implementation unit |
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| inputModule38 | File |
Python implementation unit |
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| inputModule39 | File |
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| inputModule40 | File |
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| inputModule41 | File |
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| inputModule42 | File |
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| inputModule43 | File |
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| inputModule44 | File |
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| inputModule45 | File |
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| inputModule46 | File |
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| inputModule47 | File |
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| inputModule48 | File |
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| inputModule49 | File |
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| inputModule50 | File |
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| inputModule51 | File |
Python implementation unit |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| output-cases |
output-cases.cwl
(CommandLineTool)
|
Output cases |
|
| pneumonia---primary |
pneumonia---primary.cwl
(CommandLineTool)
|
Identify Pneumonia - primary |
|
| pneumonia-basal---primary |
pneumonia-basal---primary.cwl
(CommandLineTool)
|
Identify Pneumonia basal - primary |
|
| pneumonia-cough---primary |
pneumonia-cough---primary.cwl
(CommandLineTool)
|
Identify Pneumonia cough - primary |
|
| pneumonia-ecoli---primary |
pneumonia-ecoli---primary.cwl
(CommandLineTool)
|
Identify Pneumonia ecoli - primary |
|
| pneumonia-group---primary |
pneumonia-group---primary.cwl
(CommandLineTool)
|
Identify Pneumonia group - primary |
|
| pneumonia-lobar---primary |
pneumonia-lobar---primary.cwl
(CommandLineTool)
|
Identify Pneumonia lobar - primary |
|
| read-potential-cases-fhir |
read-potential-cases-fhir.cwl
(CommandLineTool)
|
Read potential cases from a FHIR server. |
|
| viral-pneumonia---primary |
viral-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Viral Pneumonia - primary |
|
| bronchopneumonia---primary |
bronchopneumonia---primary.cwl
(CommandLineTool)
|
Identify Bronchopneumonia - primary |
|
| pneumonia-proteu---primary |
pneumonia-proteu---primary.cwl
(CommandLineTool)
|
Identify Pneumonia proteu - primary |
|
| pneumonia-abscess---primary |
pneumonia-abscess---primary.cwl
(CommandLineTool)
|
Identify Pneumonia abscess - primary |
|
| pneumonia-carinii---primary |
pneumonia-carinii---primary.cwl
(CommandLineTool)
|
Identify Pneumonia carinii - primary |
|
| pneumonia-chapter---primary |
pneumonia-chapter---primary.cwl
(CommandLineTool)
|
Identify Pneumonia chapter - primary |
|
| pneumonia-measles---primary |
pneumonia-measles---primary.cwl
(CommandLineTool)
|
Identify Pneumonia measles - primary |
|
| pneumonia-simplex---primary |
pneumonia-simplex---primary.cwl
(CommandLineTool)
|
Identify Pneumonia simplex - primary |
|
| atypical-pneumonia---primary |
atypical-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Atypical Pneumonia - primary |
|
| hospital-pneumonia---primary |
hospital-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Hospital Pneumonia - primary |
|
| pneumonia-bacteria---primary |
pneumonia-bacteria---primary.cwl
(CommandLineTool)
|
Identify Pneumonia bacteria - primary |
|
| pneumonia-detected---primary |
pneumonia-detected---primary.cwl
(CommandLineTool)
|
Identify Pneumonia detected - primary |
|
| pneumonia-organism---primary |
pneumonia-organism---primary.cwl
(CommandLineTool)
|
Identify Pneumonia organism - primary |
|
| bilateral-pneumonia---primary |
bilateral-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Bilateral Pneumonia - primary |
|
| pneumonia-community---primary |
pneumonia-community---primary.cwl
(CommandLineTool)
|
Identify Pneumonia community - primary |
|
| pneumonia-pertussis---primary |
pneumonia-pertussis---primary.cwl
(CommandLineTool)
|
Identify Pneumonia pertussis - primary |
|
| pneumonia-pplocause---primary |
pneumonia-pplocause---primary.cwl
(CommandLineTool)
|
Identify Pneumonia pplocause - primary |
|
| pneumonia-specified---primary |
pneumonia-specified---primary.cwl
(CommandLineTool)
|
Identify Pneumonia specified - primary |
|
| pneumonia-varicella---primary |
pneumonia-varicella---primary.cwl
(CommandLineTool)
|
Identify Pneumonia varicella - primary |
|
| rheumatic-pneumonia---primary |
rheumatic-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Rheumatic Pneumonia - primary |
|
| chlamydial-pneumonia---primary |
chlamydial-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Chlamydial Pneumonia - primary |
|
| infectious-pneumonia---primary |
infectious-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Infectious Pneumonia - primary |
|
| pneumonia-adenovirus---primary |
pneumonia-adenovirus---primary.cwl
(CommandLineTool)
|
Identify Pneumonia adenovirus - primary |
|
| pneumonia-classified---primary |
pneumonia-classified---primary.cwl
(CommandLineTool)
|
Identify Pneumonia classified - primary |
|
| pneumonia-influenzae---primary |
pneumonia-influenzae---primary.cwl
(CommandLineTool)
|
Identify Pneumonia influenzae - primary |
|
| pneumonia-klebsiella---primary |
pneumonia-klebsiella---primary.cwl
(CommandLineTool)
|
Identify Pneumonia klebsiella - primary |
|
| pneumonia-legionella---primary |
pneumonia-legionella---primary.cwl
(CommandLineTool)
|
Identify Pneumonia legionella - primary |
|
| pneumonia-mycoplasma---primary |
pneumonia-mycoplasma---primary.cwl
(CommandLineTool)
|
Identify Pneumonia mycoplasma - primary |
|
| pneumonia-postmeasle---primary |
pneumonia-postmeasle---primary.cwl
(CommandLineTool)
|
Identify Pneumonia postmeasle - primary |
|
| pneumonia-pseudomona---primary |
pneumonia-pseudomona---primary.cwl
(CommandLineTool)
|
Identify Pneumonia pseudomona - primary |
|
| pneumonia-salmonella---primary |
pneumonia-salmonella---primary.cwl
(CommandLineTool)
|
Identify Pneumonia salmonella - primary |
|
| pneumonia-pneumonitis---primary |
pneumonia-pneumonitis---primary.cwl
(CommandLineTool)
|
Identify Pneumonia pneumonitis - primary |
|
| tuberculous-pneumonia---primary |
tuberculous-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Tuberculous Pneumonia - primary |
|
| gramnegative-pneumonia---primary |
gramnegative-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Gramnegative Pneumonia - primary |
|
| interstitial-pneumonia---primary |
interstitial-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Interstitial Pneumonia - primary |
|
| pneumococcal-pneumonia---primary |
pneumococcal-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Pneumococcal Pneumonia - primary |
|
| pneumonia-streptococcu---primary |
pneumonia-streptococcu---primary.cwl
(CommandLineTool)
|
Identify Pneumonia streptococcu - primary |
|
| pneumonia-actinomycosis---primary |
pneumonia-actinomycosis---primary.cwl
(CommandLineTool)
|
Identify Pneumonia actinomycosis - primary |
|
| pneumonia-aspergillosis---primary |
pneumonia-aspergillosis---primary.cwl
(CommandLineTool)
|
Identify Pneumonia aspergillosis - primary |
|
| pneumonia-consolidation---primary |
pneumonia-consolidation---primary.cwl
(CommandLineTool)
|
Identify Pneumonia consolidation - primary |
|
| pneumonia-parainfluenza---primary |
pneumonia-parainfluenza---primary.cwl
(CommandLineTool)
|
Identify Pneumonia parainfluenza - primary |
|
| pneumonia-staphylococcu---primary |
pneumonia-staphylococcu---primary.cwl
(CommandLineTool)
|
Identify Pneumonia staphylococcu - primary |
|
| postoperative-pneumonia---primary |
postoperative-pneumonia---primary.cwl
(CommandLineTool)
|
Identify Postoperative Pneumonia - primary |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| cases | File |
https://w3id.org/cwl/view/git/b1d38dacba97992e49cbd6515c1907aafa736ea0/Pneumonia.cwl
