CWL Workflow: Lower-Respiratory-Tract-Infections.cwl

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Fetched 2026-05-15 16:05:03 GMT

Verified with cwltool version 3.1.20241112140730

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Nested Workflows
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Inputs/Outputs

This workflow is Open Source and may be reused according to the terms of: MIT License

Note that the tools invoked by the workflow may have separate licenses.

Inputs

ID	Type	Doc
inputModule1	File	Js implementation unit
inputModule2	File	Python implementation unit
inputModule3	File	Python implementation unit
inputModule4	File	Python implementation unit
inputModule5	File	Python implementation unit
inputModule6	File	Python implementation unit
inputModule7	File	Python implementation unit
inputModule8	File	Python implementation unit
inputModule9	File	Python implementation unit
inputModule10	File	Python implementation unit
inputModule11	File	Python implementation unit
inputModule12	File	Python implementation unit
inputModule13	File	Python implementation unit
inputModule14	File	Python implementation unit
inputModule15	File	Python implementation unit
inputModule16	File	Python implementation unit
inputModule17	File	Python implementation unit
inputModule18	File	Python implementation unit
inputModule19	File	Python implementation unit
inputModule20	File	Python implementation unit
inputModule21	File	Python implementation unit
inputModule22	File	Python implementation unit

Steps

Outputs

ID	Type	Label	Doc
cases	File

Permalink: https://w3id.org/cwl/view/git/8cc7876fc61a39f3983bc040a3940297f11d9980/Lower-Respiratory-Tract-Infections.cwl

ID	Runs	Doc
output-cases	output-cases.cwl (CommandLineTool)	Output cases
read-potential-cases-fhir	read-potential-cases-fhir.cwl (CommandLineTool)	Read potential cases from a FHIR server.
lower-respiratory-tract-infections---secondary	lower-respiratory-tract-infections---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections - secondary
acute-lower-respiratory-tract-infections---secondary	acute-lower-respiratory-tract-infections---secondary.cwl (CommandLineTool)	Identify Acute Lower Respiratory Tract Infections - secondary
lower-respiratory-tract-infections-abscess---secondary	lower-respiratory-tract-infections-abscess---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections abscess - secondary
lower-respiratory-tract-infections-organism---secondary	lower-respiratory-tract-infections-organism---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections organism - secondary
lower-respiratory-tract-infections-capsulati---secondary	lower-respiratory-tract-infections-capsulati---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections capsulati - secondary
lower-respiratory-tract-infections-confirmed---secondary	lower-respiratory-tract-infections-confirmed---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections confirmed - secondary
lower-respiratory-tract-infections-influenza---secondary	lower-respiratory-tract-infections-influenza---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections influenza - secondary
lower-respiratory-tract-infections-pneumonia---secondary	lower-respiratory-tract-infections-pneumonia---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections pneumonia - secondary
lower-respiratory-tract-infections-pyothorax---secondary	lower-respiratory-tract-infections-pyothorax---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections pyothorax - secondary
pulmonary-lower-respiratory-tract-infections---secondary	pulmonary-lower-respiratory-tract-infections---secondary.cwl (CommandLineTool)	Identify Pulmonary Lower Respiratory Tract Infections - secondary
lower-respiratory-tract-infections-classified---secondary	lower-respiratory-tract-infections-classified---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections classified - secondary
lower-respiratory-tract-infections-identified---secondary	lower-respiratory-tract-infections-identified---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections identified - secondary
lower-respiratory-tract-infections-unspecified---secondary	lower-respiratory-tract-infections-unspecified---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections unspecified - secondary
obstructive-lower-respiratory-tract-infections---secondary	obstructive-lower-respiratory-tract-infections---secondary.cwl (CommandLineTool)	Identify Obstructive Lower Respiratory Tract Infections - secondary
lower-respiratory-tract-infections-tuberculosis---secondary	lower-respiratory-tract-infections-tuberculosis---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections tuberculosis - secondary
lower-respiratory-tract-infections-aspergillosis---secondary	lower-respiratory-tract-infections-aspergillosis---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections aspergillosis - secondary
lower-respiratory-tract-infections-blastomycosis---secondary	lower-respiratory-tract-infections-blastomycosis---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections blastomycosis - secondary
lower-respiratory-tract-infections-histoplasmosis---secondary	lower-respiratory-tract-infections-histoplasmosis---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections histoplasmosis - secondary
lower-respiratory-tract-infections-pneumocystosis---secondary	lower-respiratory-tract-infections-pneumocystosis---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections pneumocystosis - secondary
lower-respiratory-tract-infections-coccidioidomycosis---secondary	lower-respiratory-tract-infections-coccidioidomycosis---secondary.cwl (CommandLineTool)	Identify Lower Respiratory Tract Infections coccidioidomycosis - secondary