Disease:
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Fetched 2025-07-08 13:39:03 GMT
Verified with cwltool version 3.1.20240508115724
- Selected
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- Default Values
- Nested Workflows
- Tools
- Inputs/Outputs
Inputs
| ID | Type | Title | Doc |
|---|---|---|---|
| inputModule1 | File |
Js implementation unit |
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| inputModule2 | File |
Python implementation unit |
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| inputModule3 | File |
Python implementation unit |
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| inputModule4 | File |
Python implementation unit |
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| inputModule5 | File |
Python implementation unit |
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| inputModule6 | File |
Python implementation unit |
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| inputModule7 | File |
Python implementation unit |
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| inputModule8 | File |
Python implementation unit |
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| inputModule9 | File |
Python implementation unit |
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| inputModule10 | File |
Python implementation unit |
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| inputModule11 | File |
Python implementation unit |
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| inputModule12 | File |
Python implementation unit |
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| inputModule13 | File |
Python implementation unit |
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| inputModule14 | File |
Python implementation unit |
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| inputModule15 | File |
Python implementation unit |
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| inputModule16 | File |
Python implementation unit |
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| inputModule17 | File |
Python implementation unit |
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| inputModule18 | File |
Python implementation unit |
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| inputModule19 | File |
Python implementation unit |
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| inputModule20 | File |
Python implementation unit |
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| inputModule21 | File |
Python implementation unit |
Steps
| ID | Runs | Label | Doc |
|---|---|---|---|
| output-cases |
output-cases.cwl
(CommandLineTool)
|
Output cases |
|
| covid19---primary |
covid19---primary.cwl
(CommandLineTool)
|
Identify Covid19 - primary |
|
| read-potential-cases-omop |
read-potential-cases-omop.cwl
(CommandLineTool)
|
Read potential cases from an OMOP db. |
|
| ccu013_01-covid19-infection---primary |
ccu013_01-covid19-infection---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID19 infection - primary |
|
| acute-ccu013_01-covid-19-infection---primary |
acute-ccu013_01-covid-19-infection---primary.cwl
(CommandLineTool)
|
Identify Acute CCU013_01 COVID-19 infection - primary |
|
| ccu013_01-covid-19-infection-assay---primary |
ccu013_01-covid-19-infection-assay---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection assay - primary |
|
| ccu013_01-covid-19-infection-scale---primary |
ccu013_01-covid-19-infection-scale---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection scale - primary |
|
| ccu013_01-covid-19-infection-serum---primary |
ccu013_01-covid-19-infection-serum---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection serum - primary |
|
| ccu013_01-covid-19-infection-result---primary |
ccu013_01-covid-19-infection-result---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection result - primary |
|
| ccu013_01-covid-19-infection-antigen---primary |
ccu013_01-covid-19-infection-antigen---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection antigen - primary |
|
| ccu013_01-covid-19-infection-antibody---primary |
ccu013_01-covid-19-infection-antibody---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection antibody - primary |
|
| ccu013_01-covid-19-infection-detected---primary |
ccu013_01-covid-19-infection-detected---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection detected - primary |
|
| ccu013_01-covid-19-infection-severity---primary |
ccu013_01-covid-19-infection-severity---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection severity - primary |
|
| ccu013_01-covid-19-infection-speciman---primary |
ccu013_01-covid-19-infection-speciman---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection speciman - primary |
|
| positive-ccu013_01-covid-19-infection---primary |
positive-ccu013_01-covid-19-infection---primary.cwl
(CommandLineTool)
|
Identify Positive CCU013_01 COVID-19 infection - primary |
|
| ccu013_01-covid-19-infection-confirmed---primary |
ccu013_01-covid-19-infection-confirmed---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection confirmed - primary |
|
| ccu013_01-covid-19-infection-detection---primary |
ccu013_01-covid-19-infection-detection---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection detection - primary |
|
| ccu013_01-covid-19-infection-reference---primary |
ccu013_01-covid-19-infection-reference---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection reference - primary |
|
| ccu013_01-covid-19-infection-coronavirus---primary |
ccu013_01-covid-19-infection-coronavirus---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection coronavirus - primary |
|
| ccu013_01-covid-19-infection-ventilation---primary |
ccu013_01-covid-19-infection-ventilation---primary.cwl
(CommandLineTool)
|
Identify CCU013_01 COVID-19 infection ventilation - primary |
|
| ribonucleic-ccu013_01-covid-19-infection---primary |
ribonucleic-ccu013_01-covid-19-infection---primary.cwl
(CommandLineTool)
|
Identify Ribonucleic CCU013_01 COVID-19 infection - primary |
Outputs
| ID | Type | Label | Doc |
|---|---|---|---|
| cases | File |
https://w3id.org/cwl/view/git/eec3b08c6a9f5932ed513f2666590bcee0c172b5/CCU013_01-COVID-19-infection.cwl
