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© kclhi 2020
'Anaphylaxis' phenotype
AasR59AE9SxUcqFjgLNGDj - Anaphylaxis
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caliber
Input
Potential cases of Anaphylaxis
⇣
Step
external
'read-potential-cases-i2b2'
Read potential cases from i2b2
Select implementation:
js
VIEW
Switch to:
read-potential-cases-disc
,
read-potential-cases-omop
,
read-potential-cases-fhir
.
⇣
Output
Initial potential cases, read from i2b2. (csv)
Input
Potential cases of Anaphylaxis
⇣
Step
logic
'anaphylactic-anaphylaxis---primary'
Identify Anaphylactic Anaphylaxis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anaphylaxis related events in electronic health record. (csv)
Input
Potential cases of Anaphylaxis
⇣
Step
logic
'anaphylaxis---primary'
Identify Anaphylaxis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anaphylaxis related events in electronic health record. (csv)
Input
Potential cases of Anaphylaxis
⇣
Step
logic
'anaphylaxis-sting---primary'
Identify Anaphylaxis sting - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anaphylaxis related events in electronic health record. (csv)
Input
Potential cases of Anaphylaxis
⇣
Step
logic
'anaphylaxis-reaction---secondary'
Identify Anaphylaxis reaction - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anaphylaxis related events in electronic health record. (csv)
Input
Potential cases of Anaphylaxis
⇣
Step
logic
'anaphylaxis-shock---secondary'
Identify Anaphylaxis shock - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anaphylaxis related events in electronic health record. (csv)
Input
Potential cases of Anaphylaxis
⇣
Step
logic
'adverse-anaphylaxis---secondary'
Identify Adverse Anaphylaxis - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anaphylaxis related events in electronic health record. (csv)
Input
Potential cases of Anaphylaxis
⇣
Step
output
'output-cases'
Output cases
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having this type of Anaphylaxis (csv)