caliber
InputPotential cases of Cystic-Fibrosis
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Step

load
'read-potential-cases-disc'
Read potential cases from disc
Select implementation:
Switch to: read-potential-cases-i2b2, read-potential-cases-omop, read-potential-cases-fhir.
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OutputInitial potential cases, read from disc. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis---secondary'
Identify Cystic Fibrosis - secondary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis---primary'
Identify Cystic Fibrosis - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'intestinal-cystic-fibrosis---primary'
Identify Intestinal Cystic Fibrosis - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-cirrhosis---primary'
Identify Cystic Fibrosis cirrhosis - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'fibrosis---primary'
Identify Fibrosis - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-review---primary'
Identify Cystic Fibrosis review - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-screening---primary'
Identify Cystic Fibrosis screening - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-mutation---primary'
Identify Cystic Fibrosis mutation - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'unknown-cystic-fibrosis---primary'
Identify Unknown Cystic Fibrosis - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-manifested---primary'
Identify Cystic Fibrosis manifested - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-obstruction---primary'
Identify Cystic Fibrosis obstruction - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-meconium---primary'
Identify Cystic Fibrosis meconium - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-monitoring---primary'
Identify Cystic Fibrosis monitoring - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
⇣
Step

logic
'cystic-fibrosis-related---primary'
Identify Cystic Fibrosis related - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-manifestation---primary'
Identify Cystic Fibrosis manifestation - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-liver---primary'
Identify Cystic Fibrosis liver - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'other-cystic-fibrosis---primary'
Identify Other Cystic Fibrosis - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'annual-cystic-fibrosis---primary'
Identify Annual Cystic Fibrosis - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis-doctor---uk-biobank'
Identify Cystic Fibrosis doctor - UK Biobank
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

logic
'cystic-fibrosis---uk-biobank'
Identify Cystic Fibrosis - UK Biobank
Select implementation:
⇣
OutputPatients with clinical codes indicating Cystic-Fibrosis related events in electronic health record. (csv)
InputPotential cases of Cystic-Fibrosis
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Step

output
'output-cases'
Output cases
Select implementation:
⇣
OutputOutput containing patients flagged as having this type of Cystic-Fibrosis (csv)