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© kclhi 2020
'Endometriosis' phenotype
2EgSY3AQ93SdxxaKC4jLWF - Endometriosis
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caliber
Input
Potential cases of Endometriosis
⇣
Step
load
'read-potential-cases-disc'
Read potential cases from disc
Select implementation:
python
js
VIEW
Switch to:
read-potential-cases-i2b2
,
read-potential-cases-omop
,
read-potential-cases-fhir
.
⇣
Output
Initial potential cases, read from disc. (csv)
Input
Potential cases of Endometriosis
⇣
Step
logic
'endometriosis---primary'
Identify Endometriosis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Endometriosis related events in electronic health record. (csv)
Input
Potential cases of Endometriosis
⇣
Step
logic
'endometriosis-adenomyosis---primary'
Identify Endometriosis adenomyosis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Endometriosis related events in electronic health record. (csv)
Input
Potential cases of Endometriosis
⇣
Step
logic
'endometriosis-uterus---primary'
Identify Endometriosis uterus - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Endometriosis related events in electronic health record. (csv)
Input
Potential cases of Endometriosis
⇣
Step
logic
'endometriosis-ovary---primary'
Identify Endometriosis ovary - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Endometriosis related events in electronic health record. (csv)
Input
Potential cases of Endometriosis
⇣
Step
logic
'other-endometriosis---primary'
Identify Other Endometriosis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Endometriosis related events in electronic health record. (csv)
Input
Potential cases of Endometriosis
⇣
Step
logic
'endometriosis-ligament---primary'
Identify Endometriosis ligament - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Endometriosis related events in electronic health record. (csv)
Input
Potential cases of Endometriosis
⇣
Step
logic
'endometriosis-peritoneum---primary'
Identify Endometriosis peritoneum - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Endometriosis related events in electronic health record. (csv)
Input
Potential cases of Endometriosis
⇣
Step
logic
'endometriosis-intestine---primary'
Identify Endometriosis intestine - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Endometriosis related events in electronic health record. (csv)
Input
Potential cases of Endometriosis
⇣
Step
logic
'endometriosis---secondary'
Identify Endometriosis - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Endometriosis related events in electronic health record. (csv)
Input
Potential cases of Endometriosis
⇣
Step
output
'output-cases'
Output cases
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having this type of Endometriosis (csv)