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© kclhi 2020
'Cholelithiasis' phenotype
3wyLRCS4K4nQFmsfXfi5em - Cholelithiasis
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caliber
Input
Potential cases of Cholelithiasis
⇣
Step
load
'read-potential-cases-disc'
Read potential cases from disc
Select implementation:
python
js
VIEW
Switch to:
read-potential-cases-i2b2
,
read-potential-cases-omop
,
read-potential-cases-fhir
.
⇣
Output
Initial potential cases, read from disc. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis-stones---primary'
Identify Cholelithiasis stones - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'colic-cholelithiasis---primary'
Identify Colic Cholelithiasis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis-gallstone---primary'
Identify Cholelithiasis gallstone - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis-obstruct---primary'
Identify Cholelithiasis obstruct - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'acute-cholelithiasis---primary'
Identify Acute Cholelithiasis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'other-cholelithiasis---primary'
Identify Other Cholelithiasis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis-mention---primary'
Identify Cholelithiasis mention - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis-calculus---primary'
Identify Cholelithiasis calculus - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis-choledocholithiasis---primary'
Identify Cholelithiasis choledocholithiasis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis-cholecystitis---primary'
Identify Cholelithiasis cholecystitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis---primary'
Identify Cholelithiasis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis-biliary---primary'
Identify Cholelithiasis biliary - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis-gallbladder---primary'
Identify Cholelithiasis gallbladder - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis-pancreatitis---primary'
Identify Cholelithiasis pancreatitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
logic
'cholelithiasis---secondary'
Identify Cholelithiasis - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Cholelithiasis related events in electronic health record. (csv)
Input
Potential cases of Cholelithiasis
⇣
Step
output
'output-cases'
Output cases
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having this type of Cholelithiasis (csv)