Phenoflow | 'Barrett's-oesophagus' phenotype

caliber

InputPotential cases of Barrett's-oesophagus

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Step

external

'read-potential-cases-i2b2'

Read potential cases from i2b2

Select implementation:

Switch to: read-potential-cases-disc, read-potential-cases-omop, read-potential-cases-fhir.

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OutputInitial potential cases, read from i2b2. (csv)

InputPotential cases of Barrett's-oesophagus

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Step

logic

'barrett's-oesophagus---primary'

Identify Barrett's oesophagus - primary

Select implementation:

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OutputPatients with clinical codes indicating Barrett's-oesophagus related events in electronic health record. (csv)

InputPotential cases of Barrett's-oesophagus

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Step

logic

'oesophagus-barrett's---secondary'

Identify Oesophagus barrett's - secondary

Select implementation:

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OutputPatients with clinical codes indicating Barrett's-oesophagus related events in electronic health record. (csv)

InputPotential cases of Barrett's-oesophagus

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Step

output

'output-cases'

Output cases

Select implementation:

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OutputOutput containing patients flagged as having this type of Barrett's-oesophagus (csv)