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© kclhi 2020
'Alcohol-Consumption' phenotype
7aXDiYMtSR6aYEkZKPBdvm - Alcohol Consumption
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caliber
Input
Potential cases of Alcohol-Consumption
⇣
Step
load
'read-potential-cases-disc'
Read potential cases from disc
Select implementation:
python
js
VIEW
Switch to:
read-potential-cases-i2b2
,
read-potential-cases-omop
,
read-potential-cases-fhir
.
⇣
Output
Initial potential cases, read from disc. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-teetotaller---primary'
Identify Alcohol Consumption teetotaller - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'nondependent-alcohol-consumption---primary'
Identify Nondependent Alcohol Consumption - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-drinker---primary'
Identify Alcohol Consumption drinker - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-drinking---primary'
Identify Alcohol Consumption drinking - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'heavy-alcohol-consumption---primary'
Identify Heavy Alcohol Consumption - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-drinks---primary'
Identify Alcohol Consumption drinks - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-spirit---primary'
Identify Alcohol Consumption spirit - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-limits---primary'
Identify Alcohol Consumption limits - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption---primary'
Identify Alcohol Consumption - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-breath---primary'
Identify Alcohol Consumption breath - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-hangover---primary'
Identify Alcohol Consumption hangover - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-intoxication---primary'
Identify Alcohol Consumption intoxication - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-level---primary'
Identify Alcohol Consumption level - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-abuse---primary'
Identify Alcohol Consumption abuse - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol---primary'
Identify Alcohol - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-declined---primary'
Identify Alcohol Consumption declined - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-induced---primary'
Identify Alcohol Consumption induced - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'amnestic-alcohol-consumption---primary'
Identify Amnestic Alcohol Consumption - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-korsakov---primary'
Identify Alcohol Consumption korsakov - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-dementium---primary'
Identify Alcohol Consumption dementium - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-paranoia---primary'
Identify Alcohol Consumption paranoia - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'other-alcohol-consumption---primary'
Identify Other Alcohol Consumption - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-psychosis---primary'
Identify Alcohol Consumption psychosis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-alcoholinduced---primary'
Identify Alcohol Consumption alcoholinduced - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'acute-alcohol-consumption---primary'
Identify Acute Alcohol Consumption - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-brain---primary'
Identify Alcohol Consumption brain - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-cirrhosis---primary'
Identify Alcohol Consumption cirrhosis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-liver---primary'
Identify Alcohol Consumption liver - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
logic
'alcohol-consumption-hepatitis---primary'
Identify Alcohol Consumption hepatitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Consumption related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Consumption
⇣
Step
output
'output-cases'
Output cases
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having this type of Alcohol-Consumption (csv)