caliber
InputPotential cases of Aspiration-pneumonitis
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Step

external
'read-potential-cases-i2b2'
Read potential cases from i2b2
Select implementation:
Switch to: read-potential-cases-disc, read-potential-cases-omop, read-potential-cases-fhir.
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OutputInitial potential cases, read from i2b2. (csv)
InputPotential cases of Aspiration-pneumonitis
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Step

logic
'aspiration-pneumonitis-inhalation---primary'
Identify Aspiration pneumonitis inhalation - primary
Select implementation:
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OutputPatients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
InputPotential cases of Aspiration-pneumonitis
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Step

logic
'aspiration-pneumonitis-vomit---primary'
Identify Aspiration pneumonitis vomit - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
InputPotential cases of Aspiration-pneumonitis
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Step

logic
'aspiration-pneumonitis-pneumonia---primary'
Identify Aspiration pneumonitis pneumonia - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
InputPotential cases of Aspiration-pneumonitis
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Step

logic
'aspiration-pneumonitis-essence---primary'
Identify Aspiration pneumonitis essence - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
InputPotential cases of Aspiration-pneumonitis
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Step

logic
'aspiration-pneumonitis-liquid---primary'
Identify Aspiration pneumonitis liquid - primary
Select implementation:
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OutputPatients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
InputPotential cases of Aspiration-pneumonitis
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Step

logic
'aspiration---primary'
Identify Aspiration - primary
Select implementation:
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OutputPatients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
InputPotential cases of Aspiration-pneumonitis
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Step

logic
'other-aspiration-pneumonitis---primary'
Identify Other Aspiration pneumonitis - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
InputPotential cases of Aspiration-pneumonitis
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Step

logic
'aspiration-pneumonitis---secondary'
Identify Aspiration pneumonitis - secondary
Select implementation:
⇣
OutputPatients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
InputPotential cases of Aspiration-pneumonitis
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Step

output
'output-cases'
Output cases
Select implementation:
⇣
OutputOutput containing patients flagged as having this type of Aspiration-pneumonitis (csv)