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© kclhi 2020
'Aspiration-pneumonitis' phenotype
LcEe7zG3b3WmAW2bZzu7Ci - Aspiration pneumonitis
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caliber
Input
Potential cases of Aspiration-pneumonitis
⇣
Step
external
'read-potential-cases-i2b2'
Read potential cases from i2b2
Select implementation:
js
VIEW
Switch to:
read-potential-cases-disc
,
read-potential-cases-omop
,
read-potential-cases-fhir
.
⇣
Output
Initial potential cases, read from i2b2. (csv)
Input
Potential cases of Aspiration-pneumonitis
⇣
Step
logic
'aspiration-pneumonitis-inhalation---primary'
Identify Aspiration pneumonitis inhalation - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
Input
Potential cases of Aspiration-pneumonitis
⇣
Step
logic
'aspiration-pneumonitis-vomit---primary'
Identify Aspiration pneumonitis vomit - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
Input
Potential cases of Aspiration-pneumonitis
⇣
Step
logic
'aspiration-pneumonitis-pneumonia---primary'
Identify Aspiration pneumonitis pneumonia - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
Input
Potential cases of Aspiration-pneumonitis
⇣
Step
logic
'aspiration-pneumonitis-essence---primary'
Identify Aspiration pneumonitis essence - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
Input
Potential cases of Aspiration-pneumonitis
⇣
Step
logic
'aspiration-pneumonitis-liquid---primary'
Identify Aspiration pneumonitis liquid - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
Input
Potential cases of Aspiration-pneumonitis
⇣
Step
logic
'aspiration---primary'
Identify Aspiration - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
Input
Potential cases of Aspiration-pneumonitis
⇣
Step
logic
'other-aspiration-pneumonitis---primary'
Identify Other Aspiration pneumonitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
Input
Potential cases of Aspiration-pneumonitis
⇣
Step
logic
'aspiration-pneumonitis---secondary'
Identify Aspiration pneumonitis - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Aspiration-pneumonitis related events in electronic health record. (csv)
Input
Potential cases of Aspiration-pneumonitis
⇣
Step
output
'output-cases'
Output cases
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having this type of Aspiration-pneumonitis (csv)