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© kclhi 2020
'Appendicitis' phenotype
5aqU7FXzZxDm78WBppyy5y - Appendicitis
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caliber
Input
Potential cases of Appendicitis
⇣
Step
load
'read-potential-cases-disc'
Read potential cases from disc
Select implementation:
python
js
VIEW
Switch to:
read-potential-cases-i2b2
,
read-potential-cases-omop
,
read-potential-cases-fhir
.
⇣
Output
Initial potential cases, read from disc. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'appendicitis---primary'
Identify Appendicitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'appendicitis-appendix---primary'
Identify Appendicitis appendix - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'abnormal-appendicitis---primary'
Identify Abnormal Appendicitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'appendicitis-appendicectomy---primary'
Identify Appendicitis appendicectomy - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'endoscopic-appendicitis---primary'
Identify Endoscopic Appendicitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'appendicitis-excision---primary'
Identify Appendicitis excision - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'appendicitis-specified---primary'
Identify Appendicitis specified - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'other-appendicitis---primary'
Identify Other Appendicitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'appendicitis-drainage---primary'
Identify Appendicitis drainage - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'appendicitis-peritonitis---primary'
Identify Appendicitis peritonitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'appendicitis-abscess---primary'
Identify Appendicitis abscess - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'acute-appendicitis---primary'
Identify Acute Appendicitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'appendicitis---secondary'
Identify Appendicitis - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
logic
'procedure-for-appendicitis---secondary'
Identify Procedure for Appendicitis - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Appendicitis related events in electronic health record. (csv)
Input
Potential cases of Appendicitis
⇣
Step
output
'output-cases'
Output cases
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having this type of Appendicitis (csv)