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© kclhi 2020
'Anorectal-fistula' phenotype
jjFso6okvLjAdwf5SzrL5A - Anorectal fistula
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caliber
Input
Potential cases of Anorectal-fistula
⇣
Step
load
'read-potential-cases-disc'
Read potential cases from disc
Select implementation:
python
js
VIEW
Switch to:
read-potential-cases-i2b2
,
read-potential-cases-omop
,
read-potential-cases-fhir
.
⇣
Output
Initial potential cases, read from disc. (csv)
Input
Potential cases of Anorectal-fistula
⇣
Step
logic
'anorectal-fistula---primary'
Identify Anorectal fistula - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anorectal-fistula related events in electronic health record. (csv)
Input
Potential cases of Anorectal-fistula
⇣
Step
logic
'anorectal-fistula-laying---primary'
Identify Anorectal fistula laying - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anorectal-fistula related events in electronic health record. (csv)
Input
Potential cases of Anorectal-fistula
⇣
Step
logic
'anorectal-fistula-excision---primary'
Identify Anorectal fistula excision - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anorectal-fistula related events in electronic health record. (csv)
Input
Potential cases of Anorectal-fistula
⇣
Step
logic
'anorectal-fistula-fistula-in-ano---primary'
Identify Anorectal fistula fistula-in-ano - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anorectal-fistula related events in electronic health record. (csv)
Input
Potential cases of Anorectal-fistula
⇣
Step
logic
'anorectal-fistula-nos---primary'
Identify Anorectal fistula nos - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anorectal-fistula related events in electronic health record. (csv)
Input
Potential cases of Anorectal-fistula
⇣
Step
logic
'anorectal-fistula-fissure---primary'
Identify Anorectal fistula fissure - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anorectal-fistula related events in electronic health record. (csv)
Input
Potential cases of Anorectal-fistula
⇣
Step
logic
'anorectal-fistula---secondary'
Identify Anorectal fistula - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anorectal-fistula related events in electronic health record. (csv)
Input
Potential cases of Anorectal-fistula
⇣
Step
logic
'procedure-for-anorectal-fistula---secondary'
Identify Procedure for Anorectal fistula - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anorectal-fistula related events in electronic health record. (csv)
Input
Potential cases of Anorectal-fistula
⇣
Step
output
'output-cases'
Output cases
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having this type of Anorectal-fistula (csv)