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© kclhi 2020
'Anal-fissure' phenotype
AyYY3Bpc5hEChq69PMdSiU - Anal fissure
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caliber
Input
Potential cases of Anal-fissure
⇣
Step
external
'read-potential-cases-i2b2'
Read potential cases from i2b2
Select implementation:
js
VIEW
Switch to:
read-potential-cases-disc
,
read-potential-cases-omop
,
read-potential-cases-fhir
.
⇣
Output
Initial potential cases, read from i2b2. (csv)
Input
Potential cases of Anal-fissure
⇣
Step
logic
'anal-fissure---primary'
Identify Anal fissure - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anal-fissure related events in electronic health record. (csv)
Input
Potential cases of Anal-fissure
⇣
Step
logic
'fissure---primary'
Identify Fissure - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anal-fissure related events in electronic health record. (csv)
Input
Potential cases of Anal-fissure
⇣
Step
logic
'anal-fissure-fistula---primary'
Identify Anal fissure fistula - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anal-fissure related events in electronic health record. (csv)
Input
Potential cases of Anal-fissure
⇣
Step
logic
'anal-fissure---secondary'
Identify Anal fissure - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anal-fissure related events in electronic health record. (csv)
Input
Potential cases of Anal-fissure
⇣
Step
logic
'procedure-for-anal-fissure---secondary'
Identify Procedure for Anal fissure - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Anal-fissure related events in electronic health record. (csv)
Input
Potential cases of Anal-fissure
⇣
Step
output
'output-cases'
Output cases
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having this type of Anal-fissure (csv)