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© kclhi 2020
'Alcohol-Problems' phenotype
UxiyF5AcxtXNJZpNvwfYE4 - Alcohol Problems
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caliber
Input
Potential cases of Alcohol-Problems
⇣
Step
load
'read-potential-cases-disc'
Read potential cases from disc
Select implementation:
python
js
VIEW
Switch to:
read-potential-cases-i2b2
,
read-potential-cases-omop
,
read-potential-cases-fhir
.
⇣
Output
Initial potential cases, read from disc. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-valcohol---primary'
Identify Alcohol Problems valcohol - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems---primary'
Identify Alcohol Problems - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-alcoholism---primary'
Identify Alcohol Problems alcoholism - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-induced---primary'
Identify Alcohol Problems induced - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-wernicke---primary'
Identify Alcohol Problems wernicke - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-tremens---primary'
Identify Alcohol Problems tremens - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-unspecified---primary'
Identify Alcohol Problems unspecified - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'continuous-alcohol-problems---primary'
Identify Continuous Alcohol Problems - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'episodic-alcohol-problems---primary'
Identify Episodic Alcohol Problems - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-remission---primary'
Identify Alcohol Problems remission - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'chronic-alcohol-problems---primary'
Identify Chronic Alcohol Problems - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-dipsomania---primary'
Identify Alcohol Problems dipsomania - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-hallucinosis---primary'
Identify Alcohol Problems hallucinosis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-state---primary'
Identify Alcohol Problems state - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-pancreatitis---primary'
Identify Alcohol Problems pancreatitis - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-counselling---primary'
Identify Alcohol Problems counselling - primary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-alcoholinduced---secondary'
Identify Alcohol Problems alcoholinduced - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-state---secondary'
Identify Alcohol Problems state - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'psychotic-alcohol-problems---secondary'
Identify Psychotic Alcohol Problems - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems---secondary'
Identify Alcohol Problems - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
logic
'alcohol-problems-pancreatitis---secondary'
Identify Alcohol Problems pancreatitis - secondary
Select implementation:
python
VIEW
⇣
Output
Patients with clinical codes indicating Alcohol-Problems related events in electronic health record. (csv)
Input
Potential cases of Alcohol-Problems
⇣
Step
output
'output-cases'
Output cases
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having this type of Alcohol-Problems (csv)