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© kclhi 2020
'Long-covid' phenotype
kmnZnISOyRwDtE8UUfsVGkZbjk - Long covid
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oxford
Input
Potential cases of Long-covid
⇣
Step
external
'read-potential-cases-i2b2'
Read potential cases from i2b2
Select implementation:
js
VIEW
Switch to:
read-potential-cases-disc
,
read-potential-cases-omop
,
read-potential-cases-fhir
.
⇣
Output
Initial potential cases, read from i2b2. (csv)
Input
Potential cases of Long-covid
⇣
Step
logic
'diagnosis-of-long-covid-symptoms-31-days-to-186-days-after-covid19-following-covid19-hospitalisation-without-long-covid'
Diagnosis of long covid symptoms 31 days to 186 days after covid19 following covid19 hospitalisation, without long covid
VIEW BRANCH
⇣
Output
Patients with logic indicating Long-covid related events in electronic health record. (csv)
Input
Potential cases of Long-covid
⇣
Step
logic
'diagnosis-of-long-covid-symptoms-31-days-to-186-days-after-covid19-without-long-covid-and-covid19-hospitalisation'
Diagnosis of long covid symptoms 31 days to 186 days after covid19, without long covid and covid19 hospitalisation
VIEW BRANCH
⇣
Output
Patients with logic indicating Long-covid related events in electronic health record. (csv)
Input
Potential cases of Long-covid
⇣
Step
logic
'long-covid-following-covid19-hospitalisation-and-covid19'
Long covid following covid19 hospitalisation and covid19
VIEW BRANCH
⇣
Output
Patients with logic indicating Long-covid related events in electronic health record. (csv)
Input
Potential cases of Long-covid
⇣
Step
logic
'long-covid-following-covid19-without-covid19-hospitalisation'
Long covid following covid19, without covid19 hospitalisation
VIEW BRANCH
⇣
Output
Patients with logic indicating Long-covid related events in electronic health record. (csv)
Input
Potential cases of Long-covid
⇣
Step
logic
'long-covid-without-covid19'
Long covid, without covid19
VIEW BRANCH
⇣
Output
Patients with logic indicating Long-covid related events in electronic health record. (csv)
Input
Potential cases of Long-covid
⇣
Step
output
'output-cases'
Output cases
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having this type of Long-covid (csv)