covid19-phenomics
InputPotential cases of covid-19.
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Step

load
'read-potential-cases-disc'
Read potential cases from disc
Select implementation:
Switch to: read-potential-cases-i2b2, read-potential-cases-omop.
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OutputInitial potential cases, read from disc. (csv)
InputPotential cases of covid-19.
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Step

logic
'icd10'
Use ICD-10 codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
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OutputPatients with ICD-10 codes indicating COVID-19 related events in electronic health record. (csv)
InputPotential cases of covid-19.
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Step

logic
'icd11'
Use ICD-11 codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
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OutputPatients with ICD-11 codes indicating COVID-19 related events in electronic health record. (csv)
InputPotential cases of covid-19.
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Step

logic
'ctv3'
Use CTV3 codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
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OutputPatients with CTV3 codes indicating COVID-19 related events in electronic health record. (csv)
InputPotential cases of covid-19.
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Step

logic
'emis'
Use EMIS codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
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OutputPatients with EMIS codes indicating COVID-19 related events in electronic health record. (csv)
InputPotential cases of covid-19.
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Step

logic
'vision'
Use Vision codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
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OutputPatients with Vision codes indicating COVID-19 related events in electronic health record. (csv)
InputPotential cases of covid-19.
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Step

logic
'snomeduk'
Use SNOMED-UK codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
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OutputPatients with SNOMED-UK codes indicating COVID-19 related events in electronic health record. (csv)
InputPotential cases of covid-19.
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Step

logic
'snomedintl'
Use SNOMED-INTL codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
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OutputPatients with SNOMED-INTL codes indicating COVID-19 related events in electronic health record. (csv)
InputPotential cases of covid-19.
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Step

logic
'loinc'
Use LOINC codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
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OutputPatients with LOINC codes indicating COVID-19 related events in electronic health record. (csv)
InputPotential cases of covid-19.
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Step

output
'output-cases'
Output cases.
Select implementation:
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OutputOutput containing patients flagged as having covid-19. (csv)