caliber
InputPotential cases of COVID-19-infection
⇣
Step

load
'read-potential-cases-disc'
Read potential cases from disc
Select implementation:
Switch to: read-potential-cases-i2b2, read-potential-cases-omop, read-potential-cases-fhir.
⇣
OutputInitial potential cases, read from disc. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-identified---secondary'
Identify COVID-19 infection identified - secondary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-confirmed---primary'
Identify COVID-19 infection confirmed - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-caused---primary'
Identify COVID-19 infection caused - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'ribonucleic-covid-19-infection---primary'
Identify Ribonucleic COVID-19 infection - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-assay---primary'
Identify COVID-19 infection assay - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-coronavirus---primary'
Identify COVID-19 infection coronavirus - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-detection---primary'
Identify COVID-19 infection detection - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-entity---primary'
Identify COVID-19 infection entity - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-assessment---primary'
Identify COVID-19 infection assessment - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-severity---primary'
Identify COVID-19 infection severity - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-detected---primary'
Identify COVID-19 infection detected - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-antibody---primary'
Identify COVID-19 infection antibody - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'acute-covid-19-infection---primary'
Identify Acute COVID-19 infection - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-serum---primary'
Identify COVID-19 infection serum - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'positive-covid-19-infection---primary'
Identify Positive COVID-19 infection - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-antigen---primary'
Identify COVID-19 infection antigen - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-speciman---primary'
Identify COVID-19 infection speciman - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

logic
'covid-19-infection-concept---primary'
Identify COVID-19 infection concept - primary
Select implementation:
⇣
OutputPatients with clinical codes indicating COVID-19-infection related events in electronic health record. (csv)
InputPotential cases of COVID-19-infection
⇣
Step

output
'output-cases'
Output cases
Select implementation:
⇣
OutputOutput containing patients flagged as having this type of COVID-19-infection (csv)