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© kclhi 2020
'covid19' phenotype
COVID-19 (coronavirus).
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covid19-phenomics
Input
Potential cases of covid-19.
⇣
Step
load
'read-potential-cases-disc'
Read potential cases from disc
Select implementation:
python
VIEW
Switch to:
read-potential-cases-i2b2
,
read-potential-cases-omop
.
⇣
Output
Initial potential cases, read from disc. (csv)
Input
Potential cases of covid-19.
⇣
Step
logic
'icd10'
Use ICD-10 codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
python
VIEW
⇣
Output
Patients with ICD-10 codes indicating COVID-19 related events in electronic health record. (csv)
Input
Potential cases of covid-19.
⇣
Step
logic
'icd11'
Use ICD-11 codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
python
VIEW
⇣
Output
Patients with ICD-11 codes indicating COVID-19 related events in electronic health record. (csv)
Input
Potential cases of covid-19.
⇣
Step
logic
'ctv3'
Use CTV3 codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
python
VIEW
⇣
Output
Patients with CTV3 codes indicating COVID-19 related events in electronic health record. (csv)
Input
Potential cases of covid-19.
⇣
Step
logic
'emis'
Use EMIS codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
python
VIEW
⇣
Output
Patients with EMIS codes indicating COVID-19 related events in electronic health record. (csv)
Input
Potential cases of covid-19.
⇣
Step
logic
'vision'
Use Vision codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
python
VIEW
⇣
Output
Patients with Vision codes indicating COVID-19 related events in electronic health record. (csv)
Input
Potential cases of covid-19.
⇣
Step
logic
'snomeduk'
Use SNOMED-UK codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
python
VIEW
⇣
Output
Patients with SNOMED-UK codes indicating COVID-19 related events in electronic health record. (csv)
Input
Potential cases of covid-19.
⇣
Step
logic
'snomedintl'
Use SNOMED-INTL codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
python
VIEW
⇣
Output
Patients with SNOMED-INTL codes indicating COVID-19 related events in electronic health record. (csv)
Input
Potential cases of covid-19.
⇣
Step
logic
'loinc'
Use LOINC codes to identify COVID-19 related events in a patient's electronic health record.
Select implementation:
python
VIEW
⇣
Output
Patients with LOINC codes indicating COVID-19 related events in electronic health record. (csv)
Input
Potential cases of covid-19.
⇣
Step
output
'output-cases'
Output cases.
Select implementation:
python
VIEW
⇣
Output
Output containing patients flagged as having covid-19. (csv)